BIOE 333 Transfer in Living Systems

BIOE 222 Cell Biology

BIOE 212 Bioengineering Lab III

Publications:

• Martino, S*., Yilmaz, D.*, Tammaro, C., Misso, G., Esposito, A., Falco, M., Caraglia, M., Cossu, A. M., Lombardi, A., Amler, E., Divin, R., Giannetti, A., Scrima, M., Dardano, P., De Stefano, L., Rea, I., De Luca  A. C., Caraglia, M. (2025). “Flexible 3D nanofiber-based SERS biosensor for detection of miRNA-223-3p in early Laryngeal Cancer diagnosis” Talanta, 285, 127293, doi:10.1016/j.talanta.2024.127293.
• Yilmaz, D., Culha, M. (2024) “Monitoring lipopolysaccharide-induced macrophage polarization by surface-enhanced Raman scattering” Microchimica Acta, 191, 548, doi: 10.1007/s00604-024-06635-3
• Yilmaz, D., Miranda, B., Lonardo, E., Rea, I., De Stefano, L., De Luca, A. C. (2024) “SERS-based pH-Dependent detection of sulfites in wine by hydrogel nanocomposites” Biosensors and Bioelectronics, 245, 115836, doi: 10.1016/j.bios.2023.115836
• Yilmaz, D., Muslu, T., Parlar, A., Kurt, H., Yüce, M. (2022) “SELEX against whole-cell bacteria resulted in lipopolysaccharide binding aptamers” Journal of Biotechnology, 354, 10-20, doi: 10.1016/j.jbiotec.2022.06.001 
• Yilmaz, D., Culha, M. (2022). "Discrimination of Receptor Mediated Endocytosis by Surface-enhanced Raman Scattering” Langmuir, 38, (20), 6281–6294, doi: 10.1021/acs.langmuir.1c03305
• Yilmaz, H., Yilmaz, D., Taskin, I. C., Culha, M. (2022). "Pharmaceutical applications of a nanospectroscopic technique: Surface-enhanced Raman spectroscopy" Advanced Drug Delivery Reviews, 184: 114184, doi: 10.1016/j.addr.2022.114184
• Yilmaz, D., Gunaydın, B., Yuce, M. (2022). “Nanotechnology in Food and Water Security: On-Site Detection of Agricultural Pollutants Through Surface Enhanced Raman Spectroscopy” Emergent Materials, 1-28, doi: 10.1007/s42247-022-00376-w
• Tarhan, T., Şen, Ö., Ciofani, M., Yilmaz, D., Culha, M. (2021). "Synthesis and characterization of silver nanoparticles decorated polydopamine coated hexagonal boron nitride and its effect on wound healing". Journal of Trace Elements in Medicine and Biology, 77, 126774, doi: 10.1016/j.jtemb.2021.126774
• Reis, R., Orak, D., Yilmaz, D., Cimen, H., Sipahi, H. (2021). "Modulation of cigarette smoke extract-induced human bronchial epithelial damage by eucalyptol and curcumin". Human & Experimental Toxicology, 0960327121997986, doi: 10.1177/0960327121997986
• Yilmaz, D., Culha, M. (2020) "Investigation of the Pathway Dependent Endocytosis of Gold Nanoparticles by Surface-Enhanced Raman Scattering", Talanta, 225, 122071, doi: 10.1016/j.talanta.2020.122071
• Obeizi, Z., Benbouzid, H., Ouchenane, S., Yilmaz, D., Culha, M., Bououdina, M. (2020) "Biosynthesis of Zinc oxide nanoparticles from essential oil of Eucalyptus globulus with antimicrobial and anti-biofilm activities", Materials Today Communications, 25, 101553, doi: 10.1016/j.mtcomm.2020.101553
• Yilmaz, H., Cobandede, Z., Yilmaz, D., Cinkilic, A., Culha, M. (2019) "Monitoring forced degradation of drugs using silica-coated AgNPs with surface-enhanced Raman Scattering", Talanta, 120828, doi: 10.1016/j.talanta.2020.120828
• Tunç, C. U., Oztaş, D. Y., Uzunoglu, D., Bayrak, Ö. F., Culha, M. (2019) "Silencing Breast Cancer Genes using Morpholino Embedded DNA-Tile-AuNPs Nanostructures" Human gene therapy, 30 (12), 1547-1558, doi: 10.1089/hum.2019.119
• Uzunoglu, D., Altunbek, M., Kuku, G., Culha, M. (2019) "Single-Cell Omics in Noninvasive Diagnosis and Testing—Surface-Enhanced Raman Spectroscopy-Based Approach" Single Cell Omics, Academic Press, 153-173, doi: 10.1016/B978-0-12-814919-5.00008-7
• Öztaş, D. Y., Altunbek, M., Uzunoglu, D., Yılmaz, H., Çetin, D., Suludere, Z., Culha, M. (2019). " Tracing size and surface chemistry dependent endosomal uptake of gold nanoparticles using surface-enhanced Raman scattering", Langmuir, 35 (11), 4020–4028, doi: 10.1021/acs.langmuir.8b03988
• Ersoz, M., Erdemir, A., Duranoglu, D., Uzunoglu, D., Arasoglu, T., Derman, S., Mansuroglu, B. (2019) "Comparative evaluation of hesperetin loaded nanoparticles for anticancer activity against C6 glioma cancer cells", Artificial Cells, Nanomedicine, and Biotechnology, 47(1), 319-329, doi: 10.1080/21691401.2018.1556213
• Derman, S., Uzunoglu, D., Acar, T., Arasoglu, T. O., Ucak, S., Ozalp, V. C., Mansuroglu, B. (2019) " Antioxidant Activity And Hemocompatibility Study Of Quercetin Loaded PLGA Nanoparticles", Iranian Journal of Pharmaceutical Research, 18(1), 1-10, doi: 10.22037/IJPR.2020.1101000
• Ucankus, G., Ercan, M., Uzunoglu, D., Culha, M., (2018) "Methods for preparation of nanocomposites in environmental remediation" New Polymer Nanocomposites for Environmental Remediation, Elsevier, 1-28, doi: 10.1016/B978-0-12-811033-1.00001-9
• Duranoglu, D., Uzunoglu, D., Mansuroğlu, B., Arasoğlu, T., Derman, S. (2018) " Synthesis of Hesperetin Loaded PLGA Nanoparticles by Two Different Experimental Design Methods and Biological Evaluation of Optimized Nanoparticles", Nanotechnology, 28;29 (39), doi: 10.1088/1361-6528/aad111
• Arasoglu, T., Derman, S., Mansuroğlu, B., Uzunoglu, D., Kocyigit, B., Gümüs, B., Acar, T., Tuncer, B. (2017). “Preparation, characterization, and enhanced antimicrobial activity: quercetin-loaded PLGA nanoparticles against foodborne pathogens”, Turkish Journal of Biology, doi: 10.3906/biy-1604-80